DNA Damage Atlas


GSM4160265-RNF4_ETO_Exo7--ExoT




Basic Information

Manual

Sample ID:   

SRR10446269


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2hrs


Treatment Dose:   

50uM


Genotype:   

RNF4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

25.1194


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.012705



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961159912210120181350.28-
chrUn_GL456389102251135410787426.132-
chr5146666483146667061146666707278.506-
chrX143482682143483239143483032267.651+
chr3128936573128936970128936789114.685-
chr12935768529357736493577141112.304-
chr514761129914761174814761154192.1843-
chr1633820441338217203382092775.8025+
chr1297061013970619179706174767.1944-
chr110073874710073896410073894862.0337-
Download the Full Peak List



Motif Analysis

Manual





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