DNA Damage Atlas


GSM4160266-WT_ETO_ExoT_only




Basic Information

Manual

Sample ID:   

SRR10446270


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2hrs


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

47.8837


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.0013



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr129357652393577371935771407839.55-
chr31289362911289368061289367885843.25-
chr51466664761466670111466667004997.55-
chr87143290471433293714331704050.17-
chr163082939630829784308296062403.38-
chrUn_GL4563961181512183120181969.49-
chr51476112981476119471476115401803.02-
chr139394121093941431939412131725.61+
chr148619880986199143861990631021.43-
chr147406578174066018740659931021.22-
Download the Full Peak List



Motif Analysis

Manual





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