DNA Damage Atlas


GSM4160267-RNF4_ETO_ExoT_only




Basic Information

Manual

Sample ID:   

SRR10446271


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2hrs


Treatment Dose:   

50uM


Genotype:   

RNF4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

143.338


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002052



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr514666613914666682714666670015884.9-
chr1293576826935773589357714611200-
chr163082940030829750308296068680.97-
chr51476112981476117561476115408027.88-
chr175315241253152776531525704402.51+
chr109487201594872360948721484107.33+
chr87143295271433826714331703876.48-
chrUn_GL4563961181512444120182391-
chr31289362161289368081289367882050.48-
chr177616115761658276163452003.33-
Download the Full Peak List



Motif Analysis

Manual





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