DNA Damage Atlas

GSM4176056-END_seq_PB_WT_REP1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10493669


Source Project ID:   

GSE140635

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00178


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512194120182773.83-
chr67072235770724798707225611427.1-
chr66812161768122027681218271022.28+
chr6686805576868129268680848976.32+
chr6682710546827154768271267732.095+
chr6701716077017201170171808666.767-
chrUn_GL456389102161095610681624.533-
chr6688620606886226468862264582.862-
chr6687355036873658768736296572.486-
chr6705730377057343070573230534.403+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512192120183088.35-
chr66761024567610709676105082605.77+
chr67072235970723122707225612228.47-
chr66812182768122027681218271416.75+
chr6701716077017180870171808831.014-
chr6687360966873648968736296731.837-
chr6700738107007427670074023727.489-
chr6682710546827147268271267647.088+
chrUn_GL456389102261095610681562.735-
chr6702166567021705070216857561.375-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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