DNA Damage Atlas

GSM4176057-END_seq_PB_WT_REP2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10493670


Source Project ID:   

GSE140635

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000528


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr67072211570724091707225616696.48-
chrUn_GL4563961181512192120182714.63-
chr66812152168122073681218272654.96+
chr66873609668736554687362962483.03-
chr67011682670117269701170601838.08-
chr66816422568164630681644251810.67-
chr67021573770216161702159571560.59+
chr66827094968271499682712671493.12+
chr66868032468681351686808481475.98+
chr67024022270240680702404371424.16-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512192120183088.35-
chr66761024567610709676105082605.77+
chr67072235970723122707225612228.47-
chr66812182768122027681218271416.75+
chr6701716077017180870171808831.014-
chr6687360966873648968736296731.837-
chr6700738107007427670074023727.489-
chr6682710546827147268271267647.088+
chrUn_GL456389102261095610681562.735-
chr6702166567021705070216857561.375-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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