DNA Damage Atlas

GSM4176058-END_seq_PB_WT_REP3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10493671


Source Project ID:   

GSE140635

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000891


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr131106030411106033411106030535033.56+
chr87143278571433181714331704143.06-
chr43135417831354419313541963063.74+
chr31289365761289368081289367822340.76-
chr129357649693577411935771462278.58-
chrUn_GL4563961181512196120182147.25-
chr51466664821466667061466667001832.99-
chr38742495687425217874251911382.93-
chr59328963493289858932896401318.73+
chr187033439703404070337891290.58-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512192120183088.35-
chr66761024567610709676105082605.77+
chr67072235970723122707225612228.47-
chr66812182768122027681218271416.75+
chr6701716077017180870171808831.014-
chr6687360966873648968736296731.837-
chr6700738107007427670074023727.489-
chr6682710546827147268271267647.088+
chrUn_GL456389102261095610678562.735-
chr6702166567021705070216857561.375-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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