DNA Damage Atlas

GSM4176063-END_seq_PB_WT_REP8

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10493676


Source Project ID:   

GSE140635

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000611


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961144812551120231272.83-
chr1100738625100739041100738953300.934-
chr5146666482146667050146666700269.141-
chr3128936212128936826128936788190.313-
chrUn_GL456389102251130710680185.963-
chrX143482724143483481143483079161.654-
chr8714327457143356371433170139.929-
chr12935765339357724893577140135.296-
chr5147610984147611790147611540124.574-
chr13110602742110603628110603053102.022+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512192120233088.35-
chr66761024567610709676105082605.77+
chr67072235970723122707225612228.47-
chr66812182768122027681218271416.75+
chr67072334570724091707235471403.24-
chr6701716077017180870171808831.014-
chr6687360966873648968736296731.837-
chr6700738107007427670074023727.489-
chr6682710546827147268271267647.088+
chrUn_GL456389102261095610680562.735-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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