DNA Damage Atlas

GSM4176066-END_seq_PB_DELJK_REP1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10493679


Source Project ID:   

GSE140635

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

ΔJκ


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001476


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512317120232018.94-
chr13939412119394143193941213562.206+
chr7190333901903381119033585355.441+
chrUn_GL45638999841101910680303.857-
chr6687360966873658768736296285.657-
chr6700738137007427670074016206.34+
chr6686797476868107568680848195.419+
chr12970613149706208497061443149.427+
chr1182629686182630167182629903132.229-
chr10722970497229768072297271130.896+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512177120232825.99-
chr51466664881466669191466666941363.53-
chr7190335671903381119033585478.145+
chrUn_GL456389102221096010680440.864-
chr13939412119394141993941213409.75+
chr2120577783120577784120577784340.102-
chr6700738137007427670074016200.818+
chr1182629697182630027182629903189.449-
chr6687360966873658768736296183.336-
chr6686802566868107568680848177.366+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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