DNA Damage Atlas

GSM4176067-END_seq_PB_DELJK_REP2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10493680


Source Project ID:   

GSE140635

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

ΔJκ


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.007002


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961142212585120231368.05-
chrX143482674143483239143483079216.787-
chrUn_GL456389100041124810680203.924-
chr668680256686813146868084877.729+
chr668735821687367266873629668.6495-
chr670073794700744587007407663.3237+
chr668271014682716606827126730.0237+
chr670215522702164707021595729.3479+
chr670171287701720517017180826.1343-
chr812171221812171273512171240823.5367+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512177120232825.99-
chr7190335671903381119033585478.145+
chrUn_GL456389102221096010680440.864-
chr13939412119394141993941213409.75+
chr2120577783120577784120577784340.102+
chr6700738137007427670074076200.818+
chr1182629697182630027182629897189.449-
chr6687360966873658768736296183.336-
chr6686802566868107568680848177.366+
chrX143482724143483239143483079174.085-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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