DNA Damage Atlas

GSM4176068-END_seq_PB_DELJK_REP3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10493681


Source Project ID:   

GSE140635

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

ΔJκ


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001143


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr87143293571433485714331706434.49-
chr31289365701289369801289367824258.76-
chr129357684493577584935771403937.11-
chr187033577703414170337892205.18-
chrUn_GL4563961181512177120182055.29-
chr115730249057302732573026961902.02-
chr51466663091466669191466667001893.38-
chr163082939630829642308296061504.61-
chr38742497987425288874251911242.26-
chr51476112981476116311476115401103.6-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512177120182825.99-
chr51466664881466669191466667001363.53-
chr7190335671903381119033585478.145+
chrUn_GL456389102221096010681440.864-
chr13939412119394141993941213409.75+
chr6700738137007427670074016200.818+
chr1182629697182630027182629903189.449-
chr6687360966873658768736296183.336-
chr6686802566868107568680848177.366+
chrX143482724143483239143483020174.085+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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