DNA Damage Atlas

GSM4176069-END_seq_PB_RAG1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10493682


Source Project ID:   

GSE140635

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

RAG1-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.013677


Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512527120232372.03-
chr8714327457143317171433170227.227-
chrUn_GL456389102231108110680217.311-
chrX143482623143483509143483079177.247-
chr1293576523935775099357714075.6457-
chr514666622014666709214666670037.842-
chr1311060271611060362811060304731.8234+
chr514761096814761196214761154029.0583-
chr1486198599861994548619906321.2318-
chr110073842310073929010073895320.8418-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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