DNA Damage Atlas

GSM4176070-END_seq_PB_DELJK_RS_REP1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10493683


Source Project ID:   

GSE140635

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

ΔJκ-RS


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002252


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512527120232812.58-
chrUn_GL456389100381095610680382.108-
chr6689400676894029568940067301.002+
chrX143482524143483497143483079202.192-
chr6681215526812226668121827103.734+
chr670215704702171107021595789.0948+
chr1454113017541135325411346761.252-
chr668271034682718046827126759.3455+
chr668256751682572876825686943.1625+
chr670239851702408237024043743.0165-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512172120232531.07-
chr6702402267024068370240437538.384-
chr6689400676894026768940067476.206+
chrUn_GL456389102331095310680457.741-
chr6681216116812222668121827445.84+
chr6684374016843760168437601328.388-
chrX143482876143483237143483079324.914-
chr6702157047021615770215957224.349+
chr6682710346827162168271267211.377+
chr6681642246816473268164425206.211-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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