DNA Damage Atlas

GSM4176072-END_seq_PB_DELJK_RS_REP3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10493685


Source Project ID:   

GSE140635

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

ΔJκ-RS


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000134


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr51466664881466667081466667003832.98-
chr51476113101476116311476115402662.08-
chr87143295871433261714331701487.73-
chrUn_GL4563961181512172120181465.82-
chr129357685093577248935771461169.5-
chr1100738746100738964100738953978.55-
chr17531525505315277653152564884.153+
chr3216983012169852521698513767.271-
chr6702402267024068370240437740.34-
chr10378203123782053637820524586.922-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961181512172120182531.07-
chr174316766443167665431676641645.71+
chr39887177988717898871771185.27+
chr9830457738304577583045775607.434-
chr6702402267024068370240437538.384-
chr6689400676894026768940067476.206+
chrUn_GL456389102331095310678457.741-
chr6681216116812222668121827445.84+
chr6684374016843760168437601328.388-
chrX143482876143483237143483020324.914+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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