DNA Damage Atlas


GSM4176073-END_seq_BMPB_BCL2TG




Basic Information

Manual

Sample ID:   

SRR10493686


Source Project ID:   

GSE140635

Cell Type:   

Primary BM pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

Bcl2 Tg


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000451



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr21950931919509546195093316231.32+
chr32169829521698531216985135885.26-
chr195031048050310698503106865266.58-
chr87143295271433171714331705088.99-
chr99030217890302396903023904898.63-
chr131106030431106033071106030473693.64+
chr129357685093577250935771402787.5-
chr103782031237820541378205242773.27-
chr148619883986199141861990571655.86-
chr51466664881466667081466667001618.98-
Download the Full Peak List



Motif Analysis

Manual





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