DNA Damage Atlas

GSM4178038-HTGTS_BMPB_VK1_117_REP2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR10495456


Source Project ID:   

GSE140672

Cell Type:   

Primary BM pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

WT


Targeted break:   

Vκ1–117 bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr670722325707241167072256283077.3+
chr668736070687365286873629667857.2-
chr670751576707520117075178165374.6+
chr668256659682571596825687758094.7+
chr668631728686321716863196052501.5-
chr668182379681826956818238145318.2+
chr114799090514799111914799111740340.9-
chr668163116681633386816312038429.7+
chr668425862684262936842608037939.3+
chr668179215681798226817957233631.6+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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