DNA Damage Atlas


GSM4207024-ETO_WO_rep2




Basic Information

Manual

Sample ID:   

SRR10598505


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2hrs, washout 0 hr


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

65.8303


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4207022-NT_rep2


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.006202



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3128936577128936806128936789221.259-
chr2147176879147179146147177932122.798+
chr12970610959706204797061776115.495-
chr1633820051338215993382092787.9598+
chr425471948254728092547228354.8203+
chr698897779890280988996750.5112+
chr514666628514666721914666669535.8401-
chr413541123813541227813541189433.3454+
chr1727534006275355792753484931.399+
chr1011192514711192636911192573525.8997+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr19173113711731137217311371186.707+
chr2147176879147179146147177932136.98+
chr16338200513382159933820927103.873+
chr413541126713541227813541189432.8044+
chr611304678411304856511304765732.6523-
chr716891115168926101689193430.6865-
chr1727534006275355792753484930.5659+
chr412892456412892555312892508726.2954+
chr1440947494409482154094787425.3075-
chr971842957186160718512325.2572+
Download the Full Merged Peak List



Motif Analysis

Manual





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