DNA Damage Atlas


GSM4207025-ETO_WO_2h_rep2




Basic Information

Manual

Sample ID:   

SRR10598506


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2hrs, washout 2 hr


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

104.769


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4207022-NT_rep2


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.009384



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12970613029706221997061776125.95-
chr214717659214718008714717793238.2602+
chr514666621314666707914666670134.7775-
chrX76598246765993897659908927.8098-
chr698894329890561988996725.2283+
chr1633819783338220223382092720.3943+
chr670175856701769077017638613.4014-
chr1727534282275357362753483811.6244-
chr87331947273319869733196649.98648+
chr76830195668303721683028309.95049+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr18705217847052178570521785223.143-
chr214717659214717950314717793262.4628+
chr1633819784338220223382092730.0817+
chr1727534282275357362753483817.8851-
chr768301956683037216830283015.4495+
chr413541155913541239313541189415.3783+
chr697147885971492949714850615.0591+
chr971842957185937718512314.1712+
chr611304652511304873911304765713.9363-
chr1312519442125215471252050413.7744-
Download the Full Merged Peak List



Motif Analysis

Manual





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