DNA Damage Atlas


GSM4207027-ETO--BTZ_rep2




Basic Information

Manual

Sample ID:   

SRR10598508


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide + Bortezomib


Treatment Time:   

2hrs + 1hr


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

25.459


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4207026-BTZ_rep2


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.013318



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389994511176106788193.95-
chr1633820390338217553382092774.3685+
chr768301965683038826830282665.862+
chr214717708714717923914717792858.34+
chr1727534320275357362753484956.6143+
chr914341853143430541434251848.9748+
chr116636004216636083416636043548.337+
chr1581077107810782878107768642.1116+
chr1457684338576852555768474141.0291+
chr743377470433788074337846539.3283-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389994511176106788301.1-
chr9245031882450319024503188262.992+
chr9784290137842901578429013170.849+
chr16338203903382142033820927118.743+
chr743378020433786724337846582.5296-
chr768301965683036776830282675.4651+
chrX10441245710441246510441245758.7477+
chr214717718014717923914717792858.2704+
chr1727534325275355662753484950.4641+
chrX11628716611628737611628716944.8625+
Download the Full Merged Peak List



Motif Analysis

Manual





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