DNA Damage Atlas


GSM4207028-ETO--BTZ_WO_rep2




Basic Information

Manual

Sample ID:   

SRR10598509


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide + Bortezomib


Treatment Time:   

2hrs + 1hr, washout 0 hr


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

42.8589


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4207026-BTZ_rep2


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.018177



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr214717746414717850614717792895.9393+
chr1633820286338214533382092770.7926+
chr768302265683034126830282627.4973+
chr812050624812050716712050678426.1608+
chr543841189438417274384139118.1235-
chr697148238971488879714849617.573+
chr1011192553311192623111192573515.6333+
chr1954875985488270548806315.3477-
chr714258016514258085014258037914.1315-
chr951161244511618815116166112.8754-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr2147177525147178506147177928129.049+
chr16338202863382140133820927119.106+
chr812050657612050716712050678459.7044+
chr768302265683034126830282650.4487+
chr1954875985488265548806328.9676-
chrX15976983615977025815977004325.2585+
chr543841189438417274384139124.7756-
chr1155086890550874455508724124.3995-
chr412892487312892534712892508723.7208+
chr714258016514258085014258037923.7155-
Download the Full Merged Peak List



Motif Analysis

Manual





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