DNA Damage Atlas


GSM4207029-ETO--BTZ_WO_2h_rep2




Basic Information

Manual

Sample ID:   

SRR10598510


Source Project ID:   

GSE140372

Cell Type:   

Primary B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide + Bortezomib


Treatment Time:   

2hrs + 1hr, washout 2 hr


Treatment Dose:   

50uM Etoposide + 5uM Bortezomib


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

159.638


Spike-in percentage:   

2.50%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM4207026-BTZ_rep2


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.006064



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12970609079706191797061774204.528-
chr6988980298902799889967100.561+
chr514666648214666678214666670087.1136-
chr871432790714331767143317080.465-
chr514761131014761158814761154165.7127-
chr1630829400308296303082960665.2034-
chr641554376415554624155494835.7076-
chr1474065781740660187406599329.0022-
chr668701337687024046870199828.3858+
chr1776161397616347761634527.921-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr514666648214666674414666670078.9876-
chr962918904629189106291891058.2673-
chr514761131014761158614761154150.4047-
chr871432790714331717143317049.8184-
chr1293576852935772519357714631.1878-
chr710623812810623813810623812827.8695+
chr1311060304411060325911060305222.8611+
chr669209599692104676921007521.9883-
chr1251639983516400015163998319.1101+
chr669614906696158306961523818.6576-
Download the Full Merged Peak List



Motif Analysis

Manual





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