DNA Damage Atlas

GSM4214689-S1-seq_wild_type_12dpp_rep1_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669582


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002523


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA4298432462726.6241+
chrY11855723118602841185806013.7701+
chr118587649185922551859006213.725+
chr1036799626368049243680174910.261+
chr843565981435681604356812010.0172-
chr151092071310923037109230039.56939-
chr62356877423570960235708609.2315-
chrX7088045570882692708806149.02104+
chr96953353669538781695358628.755+
chr11171460631171481251171460878.68815+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr2166118481661185616611854334.629+
chr9984422309844225198442232148.464+
chr369906976990760699071076.6329+
rDNA17297502462736.4703+
chr1587093359870936008709340919.9497+
chr214040607314040656814040655817.9642-
chr118587649185922001859006214.0732+
chr352597110525993925259713610.3308+
chrUn_JH58430415065399352061310.282+
chr544940231449444244494223910.2328+
Download the Full Merged Peak List


Visualization

Manual





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