DNA Damage Atlas

GSM4214690-S1-seq_wild_type_12dpp_rep2_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669583


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002028


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA1298152462834.5383+
chr11858527818592200185900628.57991+
chr1_GL456212_random1266961308951288057.76409-
chr182566151225667287256650517.72395+
chr71071106211071148451071126167.35915+
chrM111110951887.12765-
chr167259319172597517725953207.0688+
chr73896793238970028389700196.75217-
chr177107048710909371070856.42624+
chr34939377149400554493982406.40845-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA17297502462836.4703+
chr214040607314040656814040656117.9642-
chr1752069906520704655206997017.0231+
chr118587649185922001859006214.0732+
chrUn_JH58430415065399352061310.282+
chr544940231449444244494223910.2328+
chr34939605449400554493982409.44874-
chr62356877423570960235708609.43389-
chr136423260364236954642348829.21753+
chr131000725111000785721000764979.17223-
Download the Full Merged Peak List


Visualization

Manual





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