DNA Damage Atlas

GSM4214691-S1-seq_wild_type_12dpp_rep3_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669584


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003059


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA17298332462726.4008+
chr1477401102774032807740326512.4716-
chr1379946989799514407994935311.7393-
chr1212344503123467361234452111.4042+
chr349396054494005824939824011.2897-
chr1364232468642369546423488210.1339+
chr47715160877156586771544779.85229+
chr111107122101107144751107144499.82726-
chr41137009181137031531137009559.70597+
chrUn_JH5843041506539935206139.48097+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA17297502462736.4703+
chr927863078278631182786311635.2098+
chr1752069906520704655206996417.0231+
chr118587649185922001859006214.0732+
chrUn_JH58430415065399352061310.282+
chr544940231449444244494223910.2328+
chr34939605449400554493982409.44874-
chr62356877423570960235708619.43389-
chr136423260364236954642348829.21753+
chr131000725111000785721000764979.17223-
Download the Full Merged Peak List


Visualization

Manual





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