DNA Damage Atlas

GSM4214692-S1-seq_wild_type_12dpp_rep4_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669585


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.006443


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA10297502462733.4825+
chr137994704779951444799493538.89327-
chr103679937636804435368017498.15224+
chr94751893147521082475189567.88244+
chr85010650150108748501087147.00184-
chr178100390810246781004376.98659+
chr73896800738970027389700196.80564-
chr89077540490780151907775786.59649-
chr11858526218595393185900626.49835+
chrY1185578411860290118580556.47471+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr369906976990760699071176.6329+
rDNA17297502462736.4703+
chr1227198994271993492719900418.5604+
chr118587649185922001859006214.0732+
chrUn_JH58430415065399352061310.282+
chr544940231449444244494223910.2328+
chr34939605449400554493982409.44874-
chr62356877423570960235708609.43389-
chr136423260364236954642348829.21753+
chr131000725111000785721000764979.17223-
Download the Full Merged Peak List


Visualization

Manual





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