DNA Damage Atlas

GSM4214693-S1-seq_wild_type_12dpp_rep5_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669586


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003751


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA6298142462841.8177+
chr18495446884959035849582767.27108-
chr172205264122057040220549976.78826+
chr93642629936433780364292726.29389+
chr136423181264238079642348826.26751+
chrUn_JH5843044971648206136.22658+
chr146645732166463343664604236.17271+
chr131000711231000824651000764975.57155-
chr106905502069060084690572445.4564-
chr21707186217082311170763565.41922-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA17297502462836.4703+
chr214040607314040656814040656117.9642-
chr1752069906520704655206997117.0231+
chr118587649185922001859006214.0732+
chrUn_JH58430415065399352061310.282+
chr544940231449444244494223910.2328+
chr34939605449400554493982409.44874-
chr62356877423570960235708619.43389-
chr136423260364236954642348829.21753+
chr131000725111000785721000764979.17223-
Download the Full Merged Peak List


Visualization

Manual





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