DNA Damage Atlas

GSM4214694-S1-seq_Atm_null_12dpp_rep1_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669587


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Atm-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005289


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA10297262462731.2399+
chr1036799651368040343680174912.2465+
chr1667910486793190679317011.6727-
chr730636393065969306575610.9278-
chr137187712971879574718771649.66328+
chr37500831275010466750103429.15838-
chr11858763818593554185900629.15061+
chr18495474684958927849582788.99766-
chr21260643241260664611260664238.90922-
chr141038559261038583271038582648.88499-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA10297262462730.2663+
chr210768241710768265110768248320.6845+
chr1667910486793190679317013.0129-
chr1036799651368040343680174911.9044+
chr118587638185922981859006211.4997+
chr730636393065969306575611.4451-
chr1310007420010007851310007649710.6395-
chr212043847712043902312043848910.6104+
chr1371877129718795747187716410.0133+
chr152517159425173777251715979.91306+
Download the Full Merged Peak List


Visualization

Manual





Copyright © 2023 All Rights Reserved by Wu lab