DNA Damage Atlas

GSM4214695-S1-seq_Atm_null_12dpp_rep2_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669588


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Atm-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003958


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA1297362462729.2968+
chr54353778643539951435399199.83113-
chr51027957591028010921027980618.679-
chrY1185616511860290118580548.51785+
chr131000742001000795871000764978.49793-
chr159300307930689393046968.46414-
chr155208281452087281520850608.43295-
chr67942090794666679445188.37974+
chr107728134777283535772814208.2609+
chr172205278722057168220549978.21291+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA10297262462730.2663+
chr1667910486793190679316913.0129-
chr1036799651368040343680174911.9044+
chr118587638185922981859006211.4997+
chr730636393065969306575611.4451-
chr1310007420010007851310007649710.6395-
chr212043847712043902312043848010.6104+
chr1371877129718795747187716410.0133+
chr152517159425173777251715979.91306+
chr178100396810245781004369.76478+
Download the Full Merged Peak List


Visualization

Manual





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