DNA Damage Atlas

GSM4214696-S1-seq_Dmc1_wt_12dpp_rep1_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669589


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003173


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA26298042462726.2855+
chr544940171449444694494223912.5853+
chr477151565771565317715446912.2587-
chr738968005389700283897002211.1798-
chr514570201114570404614570202110.9287+
chr118588015185942601859006210.0499+
chr73932324339325273393252589.84145-
chr83239595632397983323959729.67005+
chr62017484320176930201769209.30173-
chr124333587243339950433378778.9661-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr315217812315217817415217814587.1838+
rDNA26297932462734.7953+
chr314081894114081920614081902223.6424-
chr228123383281236852812340515.8668+
chr118588015185920641859006212.119+
chr44137167541373891413738219.7059-
chr47715246877156531771544699.69365-
chr61146130691146152021146131869.65421+
chr34939623849400482493982409.08816-
chr54494017144944469449422398.41542+
Download the Full Merged Peak List


Visualization

Manual





Copyright © 2023 All Rights Reserved by Wu lab