DNA Damage Atlas

GSM4214697-S1-seq_Dmc1_wt_12dpp_rep2_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669590


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003731


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA1298482462630.9484+
chr1036799508368046953680174910.4363+
chrY11855755118602901185805310.4129+
chr62217564622177725221777129.97201-
chr51057111510573396105733729.93047-
chr155208293452087184520850609.53031-
chr38696081870173586981738.89526+
chr47715246877158132771544728.7101-
chr24876081348763012487629868.64218-
chr11858528618592269185900628.57681+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9112046602112046609112046607223.202+
rDNA26297932462634.7953+
chr118601567186017911860178932.1148+
chr498498016984981909849802826.4543+
chr314081894114081920614081902223.6424-
chr980395361803956238039539623.1677+
chr645139783451399084513984321.5181-
chr228123383281236852812340315.8668+
chr1397628498976288169762850814.5689+
chr1254801276548016245480133813.1577+
Download the Full Merged Peak List


Visualization

Manual





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