DNA Damage Atlas

GSM4214698-S1-seq_Dmc1_wt_12dpp_rep3_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669591


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.006859


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA1297932462732.112+
chrY1185449111860284118580549.35089+
chr183702973937032116370297417.21464+
chr178100393810246981004367.01504+
chr11858531318592064185900626.73367+
chr31141480241141503871141480556.50861+
chr159298878930674093047386.31878+
chr4_GL456216_random4938454735522556.1045+
chr134329371943303820432973525.94221+
chrUn_JH58430415371061206115.88314+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA26297932462734.7953+
chr118588015185920641859006212.119+
chr1375640106756405797564010811.0126+
chr44137167541373891413738319.7059-
chr47715246877156531771544779.69365+
chr61146130691146152021146131899.65421+
chr55552728855527970555278329.17446-
chr34939623849400482493982409.08816-
chr54494017144944469449422398.41542+
chr56534880265351114653510748.17731-
Download the Full Merged Peak List


Visualization

Manual





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