DNA Damage Atlas

GSM4214699-S1-seq_Dmc1_wt_12dpp_rep4_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669592


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004985


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA1298142462839.1783+
chr1_GL456210_random3320635273352596.45478-
chr4_GL456216_random4925457763522546.35596+
chr177107050710953671070866.18148+
chrUn_JH5843046170994206105.79395+
chr173617639536180540361785395.31681-
chr151036506501036551741036529555.05571-
chr61146107141146152021146131854.96355+
chr18495440284960354849582794.80344-
chr167259315372598611725953184.80168+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr315217812315217817415217814587.1838+
rDNA26297932462834.7953+
chr118601567186017911860178932.1148+
chr314081894114081920614081902423.6424-
chr118588015185920641859006212.119+
chr117281515717281571917281520711.9096+
chr44137167541373891413738319.7059-
chr47715246877156531771544729.69365-
chr61146130691146152021146131859.65421+
chr55552728855527970555278229.17446-
Download the Full Merged Peak List


Visualization

Manual





Copyright © 2023 All Rights Reserved by Wu lab