DNA Damage Atlas

GSM4214700-S1-seq_Dmc1_null_12dpp_rep1_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669593


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

Dmc-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00374


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0297532462833.056+
chr477151571771567447715447710.6067+
chrY11855775118602901185805610.4164+
chr136423268264236940642348829.89458+
chr54494022044946680449422398.6149+
chr31584222681584244981584244588.61164-
chr176646237966465500664653658.41348-
chr51457020111457040411457020197.81904+
chr131530575215307907153078747.54736-
chr17231088372315117723130517.45143+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr117281515717281520617281520346.212+
rDNA4297312462834.058+
chr1487290316872904038729031814.7194+
chr118587765185935801859006210.5023+
chr1364232682642368876423488210.2594+
chr477151571771566957715447710.1378+
chrY11855775118602901185805610.0619+
chr155761657557618826576165979.78702+
chr74579426458151845814829.69988-
chr31584222681584244981584244589.54191-
Download the Full Merged Peak List


Visualization

Manual





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