DNA Damage Atlas

GSM4214701-S1-seq_Dmc1_null_12dpp_rep2_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669594


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

Dmc-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00593


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA1297312462731.9167+
chr1364232682642368876423488210.4805+
chr59865522986994098677459.47849+
chr11171460531171481211171460979.28471+
chr103679957736804918368017499.0388+
chr51457020091457040451457020198.89174+
chr21039623091039664511039643678.78562+
chr73932317839325268393252578.39952-
chr148186549081867837818675518.33681-
chr13743049374722537451138.14483-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA4297312462734.058+
chr810870516910870555710870522017.15+
chr118587765185935801859006210.5023+
chr1364232682642368876423488210.2594+
chr477151571771566957715446910.1378-
chrY11855775118602901185806010.0619+
chr166293162629536662931869.84426+
chr155761657557618826576165979.78702+
chr74579426458151845814789.69988-
chr31584222681584244981584244559.54191-
Download the Full Merged Peak List


Visualization

Manual





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