DNA Damage Atlas

GSM4214702-S1-seq_Dmc1_null_12dpp_rep3_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669595


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

Dmc-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003619


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA4298532462535.4711+
chr1557616575576188265761659710.2659+
chr166293162629536662931859.7195+
chr57888293178885014788829659.31238+
chr103211645732120805321185489.27172-
chr51457020111457040451457020199.12208+
chr11858776518594830185900629.07242+
chr141039630101039652011039630779.00732+
chrUn_JH5843041506842203206118.44776+
chr86644861066450896664486568.26407+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1011544724411544733611544733237.5491+
rDNA4297312462534.058+
chr115853748715853769815853753230.8388+
chr569763989697643456976399918.4889+
chr1673169847317245731720015.6227+
chr115601366156018101560139210.9376+
chr118587765185935801859006210.5023+
chr1364232682642368876423488210.2594+
chr477151571771566957715447210.1378-
chrY11855775118602901185805210.0619+
Download the Full Merged Peak List


Visualization

Manual





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