DNA Damage Atlas

GSM4214703-S1-seq_Spo11_null_12dpp_rep1_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669596


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Spo11-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005372


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA22298212462728.4997+
chr349396010494003674939824011.5594-
chr1036799492368039383680174910.1067+
chr137994706279951361799493538.97158-
chr155208190952087064520850608.38981-
chrY1185256111860442118580557.8635+
chr178100396810246481004367.78604+
chr74372207343726186437240817.69302+
chr124333564843340058433378777.59947-
chr103211654632120771321185477.57772-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr18184475061844751618447514385.065+
chr6147645396147645428147645402130.06-
chr1046438343464383854643834572.0517-
rDNA22298102462730.9395+
chr118587907185922551859006213.7303+
chr252578487525788505257850913.3522+
chr1310007433810007852110007649711.8158-
chr184955894849589608495828411.0306-
chr1410385619610385830810385823210.2992-
chr103679963736803938368017499.91074+
Download the Full Merged Peak List


Visualization

Manual





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