DNA Damage Atlas

GSM4214704-S1-seq_Spo11_null_12dpp_rep2_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669597


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Spo11-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.012196


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA16298102462622.7503+
chr323522951235250372352500214.599-
chr1410385606810385830810385826413.9043-
chr1310007433810007852110007649711.9133-
chr514570192614570403214570201911.1739+
chr118587907185922551859006211.1428+
chr1781004198102456810043710.3066+
chr11863682271863703291863702909.98787-
chr182038354920385623203855709.45528-
chr21159996901160043781160020869.30119-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6147645396147645428147645403130.06-
chr2383835238383813838378106.672+
chr854132723541327765413272983.4639+
rDNA22298102462630.9395+
chr567003843670040296700385921.6527+
chr118587907185922551859006213.7303+
chr252578487525788505257850913.3522+
chr210878659610878698910878661112.843+
chr1310007433810007852110007649711.8158-
chr184955894849589608495827511.0306-
Download the Full Merged Peak List


Visualization

Manual





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