DNA Damage Atlas

GSM4214705-S1-seq_Spo11_null_12dpp_rep3_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669598


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Spo11-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004134


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA5298542462736.1907+
chr18495474584960505849582765.96418-
chrUn_JH58430412272945206115.96406+
chr101224240361224282061224260425.75905+
chr73896800538970029389700195.48036-
chr71047666191047798591047711335.46593+
chr41470612391470632851470612505.05298+
chr1_GL456212_random1251951309091288055.0133-
chr131000713651000819571000764974.98196-
chrY1185449511860290118580554.92464+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA22298102462730.9395+
chr118587907185922551859006213.7303+
chr1310007433810007852110007649711.8158-
chr184955894849589608495827611.0306-
chr1410385619610385830810385826710.2992-
chr103679963736803938368017499.91074+
chr34939601049400367493982409.89564-
chr21159996901160043781160020868.90444-
chr126288519462887554628853888.67341+
chrY1185576911860290118580558.65225+
Download the Full Merged Peak List


Visualization

Manual





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