DNA Damage Atlas

GSM4214706-S1-seq_Dmc1_wt_16dpp_rep1_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669599


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 16 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002716


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0323682462138.9219+
chrUn_JH584304673160206116.06703+
chr82983876129844278298409414.5428+
chr71047689901047759771047711333.97012+
chr41435899591435957281435922053.85931-
chr91239227601239396331239299053.79995+
chr118960508589618255896106553.56583-
chr139538480995399372953908743.43361-
chr88476867084786442847726203.41605+
chr38775167487765982877576883.37576+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA0323682462136.1566+
chrUn_JH584304672945206116.86828+
chr82983876129844278298409413.47096+
chr118960576489618255896106553.35498-
chr91239227601239396331239299053.16179+
chr71047689901047759771047711333.0631+
chr38775170487765982877576882.96791+
chr129789863979819397943712.82384-
chr88476872084786374847726202.7977+
chr41435899761435957281435922052.7907-
Download the Full Merged Peak List


Visualization

Manual





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