DNA Damage Atlas

GSM4214707-S1-seq_Dmc1_wt_16dpp_rep2_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669600


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 16 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.01319


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0360542461930.0936+
chrUn_JH584304572945206097.6644+
chr118960576489618960896106072.8111-
chr38775170487766137877576832.54604+
chr59142324291433067914270532.198+
chr91239216061239414211239248132.19728-
chr31078235301078355051078273832.17423+
chr88476872084786374847749392.17029+
chr41310669651310779011310739812.07026-
chr41249811731249909901249873722.06674-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA0323682461936.1566+
chrUn_JH584304672945206096.86828+
chr82983876129844278298409403.47096+
chr118960576489618255896106073.35498-
chr91239227601239396331239248133.16179-
chr71047689901047759771047711333.0631+
chr38775170487765982877576832.96791+
chr129789863979819397943702.82384-
chr88476872084786374847749392.7977+
chr41435899761435957281435922052.7907-
Download the Full Merged Peak List


Visualization

Manual





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