DNA Damage Atlas

GSM4214708-S1-seq_Dmc1_null_16dpp_rep1_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669601


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

Dmc-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 16 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003398


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA1323692462529.3564+
chrUn_JH5843044072305206126.38893+
chr91239225581239403451239299054.67913+
chr91237877541238120991237958934.54299-
chr118959838789628771896233804.2569+
chr61405785561406040691405889243.9277-
chr41435899591435949131435922073.50236-
chr61428504671428749821428603383.25493-
chr143067443030700785306903953.253+
chr38774681187771609877576903.1916+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA1322282462531.8266+
chrUn_JH5843044072305206126.50747+
chr41435899591435949131435922074.26776-
chr61405811581406004511405889244.13617-
chr91237900161238082051237958933.99308-
chr91239225581239403451239299053.97827+
chr118959972689628771896233803.69032+
chr11685137251685312951685217913.56126+
chr129789891979828597943703.53806-
chr61428520741428707011428603383.45471-
Download the Full Merged Peak List


Visualization

Manual





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