DNA Damage Atlas

GSM4214709-S1-seq_Dmc1_null_16dpp_rep2_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669602


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

Dmc-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 16 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002511


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0322282461934.1817+
chrUn_JH5843041873456206116.55005+
chr41435897561435957261435922094.17659-
chr88476963184786374847749453.89545+
chr11728055521728159681728124013.77916-
chr144207405842076088420740723.7531+
chr31071145911071235051071202173.5742-
chr145469493454702296546989113.54368+
chr129789350979828597943703.52704-
chr31078235261078346801078273823.49807+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA1322282461931.8266+
chrUn_JH5843044072305206116.50747+
chr41435899591435949131435922094.26776-
chr61405811581406004511405893154.13617-
chr91237900161238082051237958933.99308-
chr91239225581239403451239299043.97827+
chr118959972689628771896028303.69032+
chr11685137251685312951685217893.56126+
chr129789891979828597943703.53806-
chr61428520741428707011428629263.45471+
Download the Full Merged Peak List


Visualization

Manual





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