DNA Damage Atlas

GSM4214710-S1-seq_Dmc1_null_16dpp_rep3_adaptor_swap_T

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669603


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

Dmc-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 16 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 71.599724


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0297991913541.6206-
chrUn_JH584304373161623756.25383-
chr41435903951435953981435919325.63933+
chr144883690148846735488408975.35996+
chr122271870722723319227211615.02208+
chr129788813980019597941244.81522+
chr73757704937584949375829744.66928-
chr82983578829844240298412194.65754-
chr109758980197600316975963164.64117-
chr31472471921472575301472512854.42559+
Download the Full Peak List


Visualization

Manual





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