DNA Damage Atlas

GSM4214711-S1-seq_Exo1DA_12dpp_rep1_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669604


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Exo1DA


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.008772


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA6323512462525.3061+
chrUn_JH58430457342992168.20288+
chr88476873984786376847726232.35611+
chr41435901831435954901435922072.24755-
chr41483169961483263211483229552.17312-
chr159918427999193727991900512.15841-
chr113030142330309336303055232.15569-
chr61476455941476552601476513242.14953-
chr137623300076242434762393682.14802-
chr125766392357673410576699022.1225-
Download the Full Peak List


Visualization

Manual





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