DNA Damage Atlas

GSM4214712-S1-seq_Spo11_het_Atm_null_12dpp_rep1_adaptor_swap_T

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669605


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

Spo11+/- , Atm-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 136.001636


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA7298512480030.9651-
chrUn_JH5843043872940463916.23807-
chr109758838397600440975963465.29182-
chr188714859887154919871526775.2542+
chr121039733171039804461039760285.00635+
chr129789330980025997942484.46435+
chr185028745350296875502910344.43434+
chr41372117741372262791372202054.35967-
chr85334458453356109533500584.29493+
chr61373396191373472601373447854.19824-
Download the Full Peak List


Visualization

Manual





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