DNA Damage Atlas

GSM4214713-S1-seq_B6_PWD_F1_9dpp_rep1_adaptor_swap_T

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669606


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + PWD/PhJ (F1 hybrid)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 9 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 151.250487


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0298142480419.3169-
chrUn_JH5843044870987207716.57549-
chrY8321643583220376832182556.40414+
chr145902114591148959080765.5377-
chr121039717671039819251039759785.44556+
chr166245292625458462495435.10867+
chr14268651542694504426912395.09071-
chr15697394356982799569761725.05008-
chr76187676661881086618793985.00985-
chr167823580782992778257114.69761-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA0298142480419.6119-
chrY8321794583220376832182559.47247+
chrUn_JH5843045070535207716.72344-
chr21713013517134292171321836.16583-
chrY8823208088236142882358005.6307-
chr145902114591148959080765.52265-
chr43635924936366329363627675.35122+
chr121039724471039819251039759785.34936+
chr14268651542694504426912395.13876-
chr65613146856136789561351265.13603-
Download the Full Merged Peak List


Visualization

Manual





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