DNA Damage Atlas

GSM4214714-S1-seq_B6_PWD_F1_9dpp_rep2_adaptor_swap_T

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669607


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + PWD/PhJ (F1 hybrid)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 9 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 130.832243


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0319432482018.6133-
chrY8321794583220378832183428.58278+
chrUn_JH5843045070535207606.82903-
chr21713013117134292171321675.86143-
chr145902101591193259081135.26044-
chrY8823208088236142882357705.2412-
chr65613146856136789561351435.07417-
chr121039724471039819381039776954.89024-
chr61473109701473223231473158214.84979-
chr41299741391299830311299778754.74265+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA0298142482019.6119-
chrY8321794583220376832183429.47247+
chrUn_JH5843045070535207606.72344-
chr21713013517134292171321676.16583-
chrY8823208088236142882357705.6307-
chr145902114591148959081135.52265-
chr43635924936366329363619305.35122+
chr121039724471039819251039776955.34936-
chr14268651542694504426896315.13876+
chr65613146856136789561351435.13603-
Download the Full Merged Peak List


Visualization

Manual





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