DNA Damage Atlas

GSM4214715-S1-seq_B6_PWD_F1_12dpp_rep1_adaptor_swap_T

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669608


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + PWD/PhJ (F1 hybrid)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 86.559272


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA15320292481519.7165-
chrUn_JH5843047971250207547.31204-
chrY8823374588237564882358276.20343-
chr145902420591178159081035.30081-
chr85334469453353754533507075.24572+
chr121039719771039814331039776124.85036-
chr14268584042694535426928494.83461-
chr144853277485572848536824.80344+
chr83994966739958062399546204.63741-
chr97803485378043517780389044.62682+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA24297992481521.0814-
chrUn_JH5843047970893207547.15876-
chr21713014517133984171321836.74557-
chr152516336425168743251666886.53736-
chr83515724935161656351590906.06121+
chrY8823374588237564882358276.0556-
chrY8321755883221274832181116.03304+
chr85334547653353612533507075.92199+
chr149486073094866364948631765.87169-
chr121039721551039807891039776125.84514-
Download the Full Merged Peak List


Visualization

Manual





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