DNA Damage Atlas

GSM4214716-S1-seq_B6_PWD_F1_12dpp_rep2_adaptor_swap_T

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669609


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + PWD/PhJ (F1 hybrid)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 92.301326


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA1297992481420.7231-
chrUn_JH584304070893207547.31785-
chr145902420591088659080775.17468-
chr121039717931039819951039776314.95764-
chr166245801625456562512974.88591-
chr131284079312850068128459954.84633-
chr66880280688756268820734.64781+
chr61288475831288567711288535394.6356-
chr127403003974038637740358514.55563-
chr85334526153356138533482524.51014+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA24297992481421.0814-
chrUn_JH5843047970893207547.15876-
chr21713014517133984171321796.74557-
chr152516336425168743251666956.53736-
chr83515724935161656351590416.06121+
chrY8823374588237564882358166.0556-
chrY8321755883221274832183426.03304+
chr85334547653353612533482525.92199+
chr149486073094866364948638865.87169-
chr121039721551039807891039776315.84514-
Download the Full Merged Peak List


Visualization

Manual





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