DNA Damage Atlas

GSM4214717-S1-seq_B6_PWD_F1_12dpp_rep3_adaptor_swap_T

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669610


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + PWD/PhJ (F1 hybrid)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 128.656136


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA24320602481419.7378-
chr21713014517133984171321827.03759-
chrUn_JH584304370962207606.96975-
chr152516336425168743251667596.7745-
chr121039721551039807891039776046.15211-
chr149486073094866395948632256.09393-
chrY8321745283221274832182336.02165+
chr85334547653353612533500965.95473+
chrY8823372188237647882358165.92585-
chr83932146339329458393233665.77814+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA24297992481421.0814-
chrUn_JH5843047970893207607.15876-
chr21713014517133984171321826.74557-
chr152516336425168743251667596.53736-
chr83515724935161656351591076.06121+
chrY8823374588237564882358166.0556-
chrY8321755883221274832182336.03304+
chr85334547653353612533500965.92199+
chr149486073094866364948632255.87169-
chr121039721551039807891039776045.84514-
Download the Full Merged Peak List


Visualization

Manual





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