DNA Damage Atlas

GSM4214718-ExoT-seq_Dmc1_wt_16dpp_rep1_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR10669611


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ExoT-seq


Others:   

age: 16 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.00032


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0324821371042.3121+
chr1395384187953990739539089314.6333-
chr1189603853896193888961083214.448-
chr633611095336264063361997513.7358+
chr760353066050410604402313.0277+
chrX13995618813996605513996087511.7549-
chrX16652883116654412716653534511.743-
chr836563338365787313657185511.0044+
chr983114588831299198312087010.9312-
chr1778643504786584097865228610.6279+
Download the Full Peak List


Visualization

Manual





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